Log into the VM using 'vagrant ssh' on OSX or from Git Bash (Win)
or 'vagrant ssh-config' and Putty or another SSH tool
Change directory to the keyboard you wish to program
optionally and modify your layout,
then run 'make clean'
and then 'make' to compile the .eep and .hex files.
Or you can copy and paste the line below.
# Allow user to speed up package installs using powerpill/wget tweaks
# Always run the pacman mirror update script if possible when vagrant comes up
# This will ensure that users never get stalled on a horribly slow mirror
cd /vagrant; cd keyboard; cd ergodox_ez; make clean; make
config.vm.provision "shell", path: "avr_setup.sh"
config.vm.post_up_message = """Change directory to the keyboard you wish to program and modify your layout, then run 'make clean' and 'make' to compile the .eep and .hex files."""